| 1 | GARUDAYAKSA FC U16 | 20 |
| 2 | JAVA UNITED FC U16 | 12 |
| 3 | PERSITA U16 | 12 |
| 4 | PERSIJA JAKARTA U16 | 12 |
| 5 | ISENMULANG KALTENG FC U16 | 11 |
| 6 | DEWA UNITED BANTEN FC U16 | 10 |
| 7 | BHAYANGKARA LAMPUNG FC U16 | 6 |
| 1 | BORNEO FC SAMARINDA U16 | 21 |
| 2 | PERSIB BANDUNG U16 | 18 |
| 3 | PERSIS SOLO U16 | 12 |
| 4 | PSIS SEMARANG U16 | 10 |
| 5 | PSIM YOGYAKARTA U16 | 9 |
| 6 | AREMA FC U16 | 8 |
| 7 | PERSIJAP JEPARA U16 | 4 |
| 1 | PSS SLEMAN U16 | 27 |
| 2 | PERSEBAYA SURABAYA U16 | 19 |
| 3 | PSM MAKASSAR U16 | 14 |
| 4 | BALI UNITED FC U16 | 14 |
| 5 | MADURA UNITED FC U16 | 6 |
| 6 | DELTRAS FC U16 | 5 |
| 7 | PERSIK KEDIRI U16 | 1 |